Scaffold Ga0307515_10004263

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10004263
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29675
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (55.88%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella → Morchella sect. Distantes → Morchella sextelata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008531	Metagenome	332	Y
F016905	Metagenome / Metatranscriptome	243	Y
F048690	Metagenome	147	Y
F062316	Metagenome	130	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000426313	F016905	N/A	MSGCKLTQSEYALQSVVELFGNLLFSLSEHNLTHTYLVVFRFAELENIDYLVLRYLNTGLLPFEEFSEDLLFDEEA
Ga0307515_1000426317	F048690	GGA	MLQVVDNMEASCVFYVKVSTFTHLEQSKISLLTVNTPGIVTLTVQHDMIVSVIFMQYPGDYLRQTSADVLSLQQRHISI
Ga0307515_1000426318	F081952	N/A	MVNAPKKNFSPLPAGRYGKSTQRSTQRHHHANEGKSGLEAERVRALGALGSLRSKKKLAAEKRQETHFLSSEEKEK
Ga0307515_1000426322	F008531	GAGG	MRSLGVKGSTKSWETHERDQQFGENESIDIGKGQRLQKEGNARINKVSAMRPGLAKIIEKVRIS
Ga0307515_1000426330	F062316	N/A	LNNFESIEARCAAIFENEPLKAFFSEQSAVPSDWNAYWTDTVGEGGRLDINNPMFGPHWTRYFGAHSWFSCDPEDPCDYDGHNCAETQSTVGHAAAAATTAKSLGIPVSIVVPPTPTPSEIDPYNWHR
Ga0307515_100042634	F016905	N/A	MAGRKLTQSEYALQRVVESFGKLLFSLSEHNLTQTYRVVFRFAELENIDYLVLRYLNTGLLPFEEFSEELLFDEDA