Scaffold Ga0307515_10004028

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10004028
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30678
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y
F048690	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000402811	F026456	N/A	LATNKTPWKEDLFFAVKSARQKLSKYYAEMTPTTGMLQILAHILDPFRMLRLFRKWDKGIDIYPEDETSHTAKYQEAFLKYVENEYCAKHRCVPVN
Ga0307515_100040285	F048690	GAG	MLHVMDNMEASCVIYVKVGTFTHLEQSKISLLTVNKSGIVTLTVQHDMIVSVIFMQYPGDHLRQTSADVVSLEQHPINM
Ga0307515_100040288	F038958	GAG	MPDVMASLFVDVHRSKPKLASFHHGNCFLIASTVSAYSLRQMSLQVIADGRTRSSRNALYDRRSSRFDIAFHGMYAETNPNMR
Ga0307515_100040289	F004778	N/A	MTGKLQSTLEASGIEWPALRNHIPCIAHVIQLALGAYMSSIGVKGRTKSWEAHERDQQFGENESIDIGKRQRRRKEGNARINKVSGMRPGLAKIIEKVCIS