NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10004002

Scaffold Ga0307515_10004002


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10004002 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30758
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (49.02%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F047400Metagenome149Y
F089625Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000400212F047400GGAMDTCVPLPLYESMVQRSEGKHDQWRGYMTVLVIDHGITKSLSILTAVNRPMIEFDVDNPRDCFRQEVKWTLAIR
Ga0307515_1000400213F006048AGGAGMLKQRPTLDITRSNQYQVRAQVNKVKSHFIQSARDNIVELYDLHRFESATEDLEFIDSLLADNEYHFPVAERVEGGVCGPNPMQRESKAANEWPASTLLPGGSNPVGYLHQILSSGD
Ga0307515_1000400214F010438N/AMTRLVFATGRLLELYIWNTRPFMSASDLEMVRYATRRVAKALAEGRHWQIIEKYWITAMQQNNIWSIAFEARTKEILKEVC
Ga0307515_1000400215F004891GGTGGMIARAPGFGMGVGRFRRLLQGVGVLAMMDAGLDTTRRVESVCIVLQGAGVLRLLVPGAAVGVTIDRRCVADGVEVTR
Ga0307515_1000400251F089625N/AMTPLGFATGLSLNQAESQPVQSNQDENNYGRQQMMNGQYIKMSVNGASMICGLVSTVIHQ
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