Scaffold Ga0307515_10003999

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10003999
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30772
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (42.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000399923	F008531	AGGA	MAHIILLVLSAFMSSLGVKSRTESWEVHERDQQFGENESIDIGKSQSLREEGNARINKVLAMKPGIAKIIEKVHIS
Ga0307515_100039995	F060560	GGA	MIDDKDGHIPSPLIMFTCTALRHALLEWQKNKGVYPKASKSKLKADRPDHSNYFNYKNDIGKIASCCSVTGRKLLTSPGVADTYTFLMNTWNTLLESYQQRMYKNTLATVKRQIQQAENPTPAVVISVEAVRVDNDILLDYLTSEVVLEEPEIGSTDRNIPIDNICMYDELHFGMPGDSGDYEDEGDESDERDAIPTASW
Ga0307515_100039996	F006048	AGGAG	MLNQQPRLDIARSNRYQVHAQVDKVKSHYIQSARDNIAELYDLHCFESAAERLEFIDSLLADNKYLFLVAECVEGGVRGPNPTQRQSKADNKWLASTLLPGGSNPAVYQHQILSSGE