Scaffold Ga0307515_10003893

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10003893
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31163
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (46.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010438	Metagenome	303	Y
F042672	Metagenome	157	Y
F047400	Metagenome	149	Y
F059517	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000389312	F042672	N/A	VIATKYKDLHGWVDCVDGFIWVIEQTNMIHSVPVGAIVGPAHLVRQNAASDRIDSVWLGYNHVDLDTFWTVY
Ga0307515_1000389327	F010438	N/A	MTRLVFATGGLLVFYMWNRWPFMSAIDLEMVSCAMRRVARALAEGPHWQIIEKYWNTAMQQNNILSIAFEARTKLILKRNAEATAQVG
Ga0307515_1000389328	F059517	N/A	MLKQQPRLDSTRSNQYQVRAQVDTVKSHCIQSARDNIAELYDLHRFVSAAERLEFIDSRLADNNYLFPVAERVEGGVRGPNPTQ
Ga0307515_1000389329	F047400	GGA	MNTFVLLPLHESMAQRGAGKDDQWRGYMTALVVNHSIIKFITVLTEVIHPILECDVDTPRDRFCQEVKWTLAIR