Scaffold Ga0307515_10003678

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10003678
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32215
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F007022	Metagenome	359	Y
F007161	Metagenome	356	Y
F008599	Metagenome	330	Y
F094694	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100036781	F008599	AGCAG	MGLLYRKKEYPYLLVTILGDPIAYREGIINLKIGPI
Ga0307515_100036782	F000247	AGG	VHTYIIYIALNYKRTPYTEVAYTSCFASSLNISAGKTLVPSFSVPFTYLSAGKKPYYTSSLSLNRSIGPTSIGL
Ga0307515_100036785	F094694	AGG	VVSVFFKVGLVYIVYKVLSEYIYLLTLTYIVAIINFIGKSEY
Ga0307515_100036786	F007022	N/A	LAICYNYNKEGYFALFCPKLKDIGDIKEIKEGKTSNKLGKEEP
Ga0307515_100036787	F007161	N/A	VLYYFINKYKLDRGLVLKLGLKVSLGVPSGLTKEVEYFSFFRKEMVIINAELFLYLNPLILKGRVYSIK