Scaffold Ga0307515

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10003378 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33648
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (69.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33648

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (69.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6992

Long. (^o)

-120.899

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F038018	Metagenome / Metatranscriptome	166	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000337825	F038018	GGAGG	VAQTRENIFCHGRQRRDQQKTLWTEVGKAMGWRAGRCRHVQSPELLSMVKCDKAVMDFLIATDIGKFAHKRVEEDEE
Ga0307515_100033785	F004891	GGA	MIAQASGFGMGVGRFSRSLRGLGVLAMPDSGLDTTRGIGSVCMVALGAGVLRLLVPGVAVGLIIDCCCVVVGVEATR
Ga0307515_100033786	F010438	N/A	MVSGSPSIHRFGHSDMTCLVFATGRLLQLYMWNSRPFMSASDLEMVSYATRCIVKGLAEAPHSQIIETYWNTAMQQNNIWSLAFEARTKKILKEVS
Ga0307515_100033787	F006048	GAG	VDITRSNRYQVRAQVNKVKSHFIQSVRDNIAERYDLQRFESAAERLESIDSLLAENKYLFPVAERVEGGVHSPKPTQRESKADNEWLRSTLLPGDSNPPVYLH
Ga0307515_100033788	F060560	GGA	MINDKDSHIPSPLIMFTCTALRHAPLEWQKNSGVHLKASKSKLKANRPDRSNYFNHKNDGGTISSCCPVTGRKLLTSPGIADMYTFLMNTWDTLPESYQQTVYNNTLATVKRQIQQAENPTPAVVIRVEAARVDNAILLDYLASEVALEEPEIGSTDQNIPIDNSCTDDELHFWMPAASGDYEDEGEESNDRDAIPTASRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307515_10003378

Overview

Ecosystem & Geography

Associated Families

Sequences