Scaffold Ga0307515_10002674

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10002674
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38174
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003457	Metagenome	485	Y
F041034	Metagenome	160	Y
F042656	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100026741	F041034	GGA	VGVSRILILVEFGKILRLVESGGFLRYRVDSYRNFRLVDPSGFFRF
Ga0307515_100026743	F042656	GGA	MDIGGNLILVKFGGIPRLVESGRFLRHRVDISGNLRLVGFSRFPRF
Ga0307515_100026747	F003457	AGCAGG	VYFFSAKAFLISAIVIAKIVYSGFLVSCANRVAPIIRISRVLSSLRLSIVFYLGLGLVLGTELVLDLGSGSLRILFIVEY