Scaffold Ga0307515_10002032

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10002032
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44708
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (55.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000433	Metagenome	1147	Y
F012990	Metagenome	275	Y
F015421	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000203254	F015421	N/A	MRVCSRTLSGRLFRKSSSFSENIAEEDNQSLYNENNRVRTLRNHMNPTRTSAPSCIVFPPDASHFNFKPDIIQLLPSFHGLDLEIHTYI
Ga0307515_1000203256	F000433	N/A	MVFQFGLNQHLFPKLSPLFVFSISIVKLINQSFDLCDRSIFKMNIYHKLKVSYIIRHVIIKHALVKELLILHVQNDDIKS
Ga0307515_1000203259	F012990	GGAG	MEGVVSLDNSVGAEIHGDGTIDLDYLVEAGSHSVSLDDLSIRGCMYWKRDHIYVGVVR