 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028794 Open in IMG/M |
| Scaffold ID | Ga0307515_10001850 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47147 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (64.91%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Pyronemataceae → Sphaerosporella → Sphaerosporella brunnea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 46.6992 | Long. (o) | -120.899 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008227 | Metagenome | 336 | Y |
| F036505 | Metagenome | 169 | Y |
| F038958 | Metagenome | 164 | Y |
| F048690 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307515_1000185013 | F008227 | N/A | MDTHPPPPGGSGTNTGRLAGAPTNTDILCTQQEGRHKLVHRNAVNAATMHMTQDAHLKIVRETGSRKNKKQHAVGCEYIHLEVKGSQLTV |
| Ga0307515_1000185015 | F048690 | GAG | MLQVIDNMEASCIFYVKVGTFTYPKQSKISLLTVNNSGIVTLTVQHEIVVSIIFTQYPGDYFRQTSPDVQSLEQHPINK |
| Ga0307515_100018505 | F038958 | N/A | MTEVIANLFVDVHPSKAKLTLFVDVNWFLIASTVSVYSLRQILLRVLADGNTNLLPYALYDRRSSTFDIAFHGICAETKPNTRYQFQVSW |
| Ga0307515_100018506 | F036505 | N/A | MAHIIQLSLGAFMSSLGVKGHTKSWEAHERDQQFGENESTDIGKSQRLRKEGNARINKVPAMRPGLAEIIEKVRISTYYESAETDLHIAENACCIDYADTWTSKRVH |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |