NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10001816

Scaffold Ga0307515_10001816


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10001816 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47607
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (63.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F060560Metagenome132Y
F081959Metagenome113Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100018161F004891N/AMGVGRFSTPLRGVGVVAMPDTGLDTTRRVQSLCMVPLGAGVLRLLVRSVAVGVIIDRCCVADWLDVTR
Ga0307515_100018162F010438GAGMEMVSYAMRRVAKPLAEAPHRQIIETYWNTAMQQNNIWSIAFKARAKEILNEVC
Ga0307515_100018163F006048AGGAGMLNQRPTVDITHSNWYQVRAQVHKVKSHFIQSVRDNIAELYDLHCIEPAAERVEFIDSLLADNKYHFPVAEHVEGAVRGPHPTQRESKVDNQWLESILLPGGSNPAV
Ga0307515_1000181648F060560N/AMIDDEDGHRPSPLIMFTCTALCHGLLEWQKHKDAHLKASRSKLKADGPDCSNYFNCKKDGGKIVSCCAVRGRKLLTSPGVADTYTFLMNTWNTLPEGYQQRVYNNTLATVKRQIQKAENPTPAVVVSVEAPRVDNGILLQYMTSEVALEEPEIGTTDRNLLIDNNYSDDELHFGMPGGSGDSEDKRDERDDIPTDSRRRQALTELEWFEPGNQ
Ga0307515_1000181649F081959GGAMSMAMRARMVMMRMLTRRKKHRTPMMHQCTMFRTEGIVLESVTNGHYISDL
Ga0307515_1000181665F092994N/AMDLSAGRRRNSNEERAMRFADGRCLYCGGFNHRAVDCAVRMKARSFNVIGGEVKEVA
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