NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10001802

Scaffold Ga0307515_10001802


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10001802 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47802
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (61.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051592Metagenome143Y
F059517Metagenome133Y
F063295Metagenome / Metatranscriptome129Y
F079413Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100018021F051592N/AVENPLLEVVKHTDLHCMEEVGLREVAHNKGNVSKHVESSVNMARREFGIDCLGVGIAERSIKVMILPGV
Ga0307515_1000180211F059517N/AMHKGDLERGMLKQQPTLHITRSNWYQFRALVNKVKSHSIQSAMDNIVELYDLHRVVSDAEHFECIDSLLADNKYLFPVAEHVEGSVHGLNPTQSV
Ga0307515_1000180236F079413N/ALDLGSETELQIKVKEFLFDDAYLSKVVNDKKSWFTLMEVLDLIYHQCFFTANSLGRQPTTSQYFQPLAPQTLALAATAIHCAMSEYASGKKATLGFSQDEY
Ga0307515_100018024F063295GGAVWVKQRPGRCDGALNGRLPWQLQRLFKIKLQNEDGAFVEYWLALALTTIPENSGNLDPVSKFVQLRQAPAAVALQVFSVGNIVGCAHVFPEIATSSKTGDGRNE

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