Scaffold Ga0307515_10001802

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10001802
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47802
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051592	Metagenome	143	Y
F059517	Metagenome	133	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079413	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100018021	F051592	N/A	VENPLLEVVKHTDLHCMEEVGLREVAHNKGNVSKHVESSVNMARREFGIDCLGVGIAERSIKVMILPGV
Ga0307515_1000180211	F059517	N/A	MHKGDLERGMLKQQPTLHITRSNWYQFRALVNKVKSHSIQSAMDNIVELYDLHRVVSDAEHFECIDSLLADNKYLFPVAEHVEGSVHGLNPTQSV
Ga0307515_1000180236	F079413	N/A	LDLGSETELQIKVKEFLFDDAYLSKVVNDKKSWFTLMEVLDLIYHQCFFTANSLGRQPTTSQYFQPLAPQTLALAATAIHCAMSEYASGKKATLGFSQDEY
Ga0307515_100018024	F063295	GGA	VWVKQRPGRCDGALNGRLPWQLQRLFKIKLQNEDGAFVEYWLALALTTIPENSGNLDPVSKFVQLRQAPAAVALQVFSVGNIVGCAHVFPEIATSSKTGDGRNE