Scaffold Ga0307515_10001704

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10001704
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49013
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (76.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060560	Metagenome	132	Y
F079540	Metagenome	115	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000170416	F092994	AGGA	MDLRAARRRISAEDRAKRFTDGRRLYCGGLNHRAAECAARKIAQTFKAAGAEVKEVGTETGSEESVKEYVNSRKMALQLTEKVLFQIL
Ga0307515_1000170451	F079540	AGG	VLGYNQNVPIDSIFIKLQNGLLYYHQPFHCPTSVEHLGLDCKVEYTNANQGIMPEAHNIWVQYAQSEENDLDHTFQGQIPSFPVLYFSWTPPNQILQFQEPLPAHKATLTFSTQCKMTQQWVLGPQVQEYAVVIPTKFNDLHGWADCVDRFIRVVKLTNKMHIVPVGAIVGPAHLVRENAAADGIDSIWVVNNHVDLDTYWTVY
Ga0307515_1000170471	F060560	GGA	MIDDNDGHIPSPLTMFTFTALRNALLEWQTNKGVHLKPSKSKLKVDRPDRSNYFNYKNGGGKNASCCAAMGRNLLISPGVADTYIFLMNTWNTLPESYQQRVYQYTLAPVKRYIQQVENLTPAVVISLQEAHVDNAILRDHLTSKVALEQPGIRSTDPDIPIENNCTDDSLHLGMAGGSGDYKDEGDESDEGDSIPTASGQ