Scaffold Ga0307515_10001679

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10001679
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49342
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (71.88%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F063295	Metagenome / Metatranscriptome	129	Y
F078047	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000167917	F063295	GGA	VWVKQLPGRCNGALNGRLPWQLQRLFKIKLQNEDGACVEFWLALALTTIPENSGNLDPVSKFVQVRKAPAAVALQVFSIGNIVGCAHVIPEIATSSKTGDRRNERWIVNSHIDLVTWNDVYNW
Ga0307515_1000167929	F008227	N/A	MDTQPPPAGQSGSNTGRLAGATSNTELPGTQQERRHKFVHRDAANGSTKHMTQDAQLKIVCKTGSSKNKKQHAVGCDYIIIVANGGQLTE
Ga0307515_1000167937	F004778	N/A	VLDRVELTDGRWLGITTDNATSNLSLTCEMQSTLEASGIEWPALRNHIPCMSHIIQLALGAFMSSLGVNGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARIYKVSAMRLGLAEIIEKVRIS
Ga0307515_1000167943	F078047	AGGA	VGGYFSGTLGGGRMGDNLEFFGEVLGLFLVFCLIYYYIIHIHA
Ga0307515_100016795	F006048	AGGAG	MLNQRPTLDITRSNRYQVRAQVDKIKPHFIQSARENIAELYDLHRFESATEHLEFIDSLLADNEYLFPIAERVEGGARGPNPTQRESKAANKWLASTLLPGGSNPAVYLHQILSSGE
Ga0307515_100016796	F010438	GGAG	MWTRRPFMSATDLETVSYATRRVSKALAEGPHWQIIEMYWNTAMQQNNISSIAFEARTEEILKEVC
Ga0307515_100016797	F004891	GGAG	MIVRASGLGMGVGRFSRPRRGVGVITMPDSGLDTMRRVEVPQGAVVLPLLVPGVAVGVFIDRRCVAERVEVTR