NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10001605

Scaffold Ga0307515_10001605


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10001605 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50363
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (42.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F006048Metagenome382Y
F008227Metagenome336Y
F019765Metagenome227Y
F038958Metagenome164Y
F042672Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000160510F019765GAGMLQVMDNMEVSCIFYVKVSTFTHLDQSPIAIFTVDESGIMMLIIQHEIIVSVSFM
Ga0307515_1000160513F038958N/AMTDVMASLFVDVHPSKAKLTLFRSGNCFLIGSTVSACSLQQMLLRVEADGRTGSPHNALYDRCSSRFDIAFHEMCAETNPNMR
Ga0307515_1000160514F004778N/AVLDRFEIPDGCLLGITTDNASSNYSMTRELQSTLEASGTEWPELRNHIPCMAQVIQLALGAFMSSFGVKGRTKSWEAHERDQQFGENESIDIGKSKRLRKEGNARINKVLAMRPGLAKIIEKVRIS
Ga0307515_1000160529F006048AGGAGMLKQRPTLDNTHANGYQVRAHVNMVKSHLIQSARDNIAELYDLHHIVSAAERLEFIDSVLAYNKYLFPIAERVEDGVRGPNPTQRELKAANEWLASTLNPGGSTPADYLRQNLSSGE
Ga0307515_1000160559F042672N/AMYKDPHCWAGCVDGFVWVVKQTDQMHIVPVKEIVGLAHLVRENAASDRIDSIWLVNDHVDLDTDWTVY
Ga0307515_100016059F008227GGALAGATSNTELLGTQQEHRHKLVHRDAANGATKHMTQDAHLMIVRKTGSSKNKKQHAVGCEYILIVANGSQLTV
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Institute for Fundamental Biomedical Research
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