Scaffold Ga0307515_10001427

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10001427
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54090
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (44.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F019765	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000142732	F019765	GGA	MDNMQAGCVFYVKVGMFTHLEQTKICLLTVKKSEIETLTVRYDVSVSVIST
Ga0307515_1000142738	F004778	N/A	VQDRFELTDSRLLGITTDNASSNYSMTRELQSTYEASGIKWQALRNHIPGMAHVIQLALGGFMSSLGVQDHSKSWEAHERAQHFGENASIDVWKTQRLRKEGNARINKVMAMRPGFAKIIEKIRIS
Ga0307515_1000142745	F008227	GGA	LAGATSYPEILGTQHQRRHKLVHRDAADAATQYLTQDAHLKIVRKTGSRRNTKHQAVGSEYIRIDAIGGQLTV
Ga0307515_1000142746	F019765	GAG	MLQVMDTMEASCIFYVKVGMFTHLEQRKIFLLTVKKSGIVTLTLQHDLIVSIVFM
Ga0307515_1000142763	F008531	AGG	MSSLGVKDLTKSWEAHDRDPQFGRNESIDIKNSQRLRKEGNARINKVSATKPGSAMIFGKVRIS