Scaffold Ga0307515_10001043

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10001043
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63397
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (68.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000104310	F004891	GGA	MIAWASGFGMGVGRFSRPLRGVGVLAIPDARLDTMRRVESVYIVPLGAGVLRLLVPGVAVGVIIDHRCVADGVEVMH
Ga0307515_1000104311	F010438	GGAG	MWNRRLFMSASDLEMVSYATQHIAKALAEAPHWQIIEMYWNTAMQQNNIWSIAFEARTKEILTEVC
Ga0307515_1000104312	F006048	N/A	MVDIACSNRYQVRTQVNKVKSHFIQSARDNIAELYDLHRLESAAEHLEIIDSLLADNKNLFRVAEHVEGGVHGPNPTWRESKANNEWLVSTSRPGGSNPAVYLYQISSSG
Ga0307515_1000104313	F060560	GGA	MINNKDGHIPSLLIMFTCTALRHALLEWQKNKGVHPKASKSRLKADRPDRSNYFNHKNDGGKIASCCAVTGRKLLISPGVADTYTFFMNTWNTLPESYQQRVYNNTFATVKRQIQQAENPTPAVVISVEAAHVENAILLDYWASEVALEEPEIGSTDPNIPIDNNCTDD
Ga0307515_100010433	F051592	GAG	VENPLLQVVKHAGLHCMQEVGLQEVAHDTGNMSKHVDSSVDMARREFGIGCLGVGIAEHS