Scaffold Ga0307515

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10001022 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63810
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (60.76%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

63810

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (60.76%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6992

Long. (^o)

-120.899

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F059517	Metagenome	133	Y
F060560	Metagenome	132	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000102213	F004778	N/A	VVDHFDLTDGLLLGITTHNGSSNYSMTRGLQSPLGASPIEWPPLRNHIPCMANVIQLASGAFMSSLGVNGHTKSWGAHERDQQFGENESIDIGKSQRLRKEGNARINKVSAMKPGLAKILEKVRIS
Ga0307515_1000102221	F059517	AGGAG	MLKQWPTLDVTRSNRYQVRAQVDQVKSHFIQSARDKIAELDHLHRFESAAELLEFIDSLLTDNMYLLPVAECVEGGGLGRNPMPRVSEAVDE
Ga0307515_1000102233	F063295	GGA	VWEKQRPWRCYGASHGRLPWQLQRLYKIMLQNEDGAFFEYWLALALITIPENSGTLDPVSKFVQVSKALAAIGLQVFSVGNIVGCAHVIPEIANSSNKTGDGQNERWIVNCHRDLATWNDVYN
Ga0307515_100010224	F004778	AGCAG	VLDHFELTDGGLLGITTDNDSSNYSMTRELQSTFEASGIEWPELRNHIPCMAHVIQLALGAFMSSLGVKDHTNSWEAHERDQQFGKNESIDIGKSQRLRKQGNDRINKMSAIIPGLAKIIEKVRIS
Ga0307515_1000102273	F081959	GGA	MSTGMRARMATMRMRRKKHRKPLMDQRRMWRTEGIVLESVMIGQYISDL
Ga0307515_1000102275	F060560	N/A	VYHRANNPGKYADRFYNSMIDDKDGHIPSPLIMFTSTALRHALLEWQQNKGVHPKASKSMLKADRLDRSNYFNCKNDCGKIVSCCAVTGRNLLPTPGFADTYTFLMNTWNTLPDSYPQRVYTNTLATVKRQIQQAENPTPAVVISVEAVCVDNAILLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307515_10001022

Overview

Ecosystem & Geography

Associated Families

Sequences