Scaffold Ga0307515

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10000966 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65608
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (34.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

65608

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (34.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6992

Long. (^o)

-120.899

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F016905	Metagenome / Metatranscriptome	243	Y
F046750	Metagenome	150	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000096627	F016905	N/A	VTGVFIPGHQYTPAEYEMQKSVESFGNLLFESAEHRLPHTYPVAFRFRQLELIDHLVLTYLHTGALRYEAFSKAWLFDGDT
Ga0307515_1000096640	F046750	N/A	MYIELYHLANNRGKYADGFYNSMIHDKDSHIPSSLIMFTCTALLHAFLEWPKNNCVYPKVSKSKLKADRLDRSNYFNHRIDCGKLASCHDAMGRKLLNWSDVVDTYTLLMHPWNTLPESYQKKVYNNSLGTVKRQIQQAENTTPAVVISVEAALVDNAILLDYLASEVALGEPENGSTDPNIPIDNKCTDDKFQLRMPRGSGDYEDEGDETEDRYAMPSARRRQQPRTEHTRFDLGIRITDR
Ga0307515_1000096641	F006048	AGTAG	MVNEWPTLDNTCSNRYQVCAKVDTVKSQYIHSARDNIAELYELHRFESAVERVEFIDSLLVDKTYLFPVGERVEGDVSGPNLTQSESKADNEWLAPALFPGGCNPAGYVHRIVSSGE
Ga0307515_1000096652	F006048	GGA	MQKQLPILGITRSNQYQAHTQVDKVKSHFIQSAKDNIGDLYDLHRLKSGIEHVELINSLLADDKYMFPIAESVEGGVRGPNPMQRESKVANKWLGYTRLPGGCNPAVCLHQILSSAE
Ga0307515_1000096653	F060560	GGA	MIDNKDGHIPSPLIMSTCITLCHALLEWQKNNGVHEKSSKSKLNADRPDRSTYFNCKNDGGKIISCCTVAGRKLLTSPGVAVTYTFLMNTWNTLPESYELRLYNNTLATVRSQIQQAENPTAAMLISLEVVPVDNASLVDNLTCEVALEESEIDSSDPNIPMDNNCTDDELPFGMPAGSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307515_10000966

Overview

Ecosystem & Geography

Associated Families

Sequences