NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000960

Scaffold Ga0307515_10000960


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000960 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65717
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (72.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F046750Metagenome150Y
F078047Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000096049F078047AGGAVGGYFSGTLDGGRMGDDSEFFGEVLGLFLVICLFHYYIIHIQA
Ga0307515_1000096063F004891GGAMIAWASGLGMGVGRFSRPLRGVGVLAMPDAGLDTTRRINSVFEVPLRAGALRLLVPGVAVGVIIHRHCVVDGVISATRELFSEDKGVEY
Ga0307515_1000096064F006048AGGAGMLNQRPTLDITRSNRYQIRAQVDQVKSHFIQSARDNIAEIYDLHCFEFNAERLKFIDSLLADNKYLFPLAEHVEGGVHGPKSTQRVSKAANEWPASTLLPGGSNPTVYLHQILSSGE
Ga0307515_1000096065F046750GGAMIDDKDGQIPSPLIMFTCTVLGHSLLEWQKNKGVQSKASKSKLKADRPDRSNYFNYKNDGGKNAPCCAATGRKLLTSPGVADTYAFLMNTWNTLPESYQQRLYNNTLATVKRQIQQAENPTPAVVSSMEAARVDNAILLDYLTSEVAHEEPEIGSTDPNIPIENNCTDDELHFGMPLCSGHYEDEGDESDVRDAIHPVSRRRRPVTELETFDLGTSDVDGYEGQDGDDAYADEEEEALQADHGSMQNVED
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