NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000925

Scaffold Ga0307515_10000925


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000925 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67421
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (39.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F048690Metagenome147Y
F079413Metagenome / Metatranscriptome115Y
F080709Metagenome / Metatranscriptome114Y
F088003Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000092543F079413N/ALDCESQTELRILVEEILFDDAYLSKVIDDEKSWFTRMEVLDLIYHQIFFTANSLGRQLTASQFFQLLTPQTLALVAAAIHCALSEYATGKKVTVMFSQDEY
Ga0307515_1000092557F088003N/AVKPPWSTKALVQTVREIEHHDVVSSGIFADEYPDKHPHEWTKQALITLEEATEAYMVEVTAEFHC
Ga0307515_1000092558F008227N/AMDTQPPLPGESGSNTGRLVGATTNTDILGTQQEHRHKLVHRDAANAATKHMTQDAHLKIVRKTGRRKNKKQYAVICEYIHIKQKGSQSTV
Ga0307515_1000092559F048690N/AMLQVMDNMEASCVFYVKVGTFTHLEQSKISLLTVNNSGIVTLTVQHDMIVSVIFMQYPRDCLRQTSADVVSLKQHLINI
Ga0307515_1000092572F080709N/AMVELSTNQREIRGDGGNHHEKLGLKRILCASQFTIPDTAGTSPDLAGNNTDTWPSKPNQASRTPAFS
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