NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000849

Scaffold Ga0307515_10000849


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000849 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70291
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (30.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019765Metagenome227Y
F022123Metagenome215Y
F036505Metagenome169Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000084933F036505AGGAGLKEVLDHFKLTDGRLLGITTDNPLFNYLMTLELQSTLEPSGFWLPAMWNHIPCMANVIQLALGAFMTNLGVKGCTKSWEAHERDEQFGENEYTDIGKSQRLQEESNSRINTVSTMRPGLVQITEKVRISRHFELPETDLHIAENTCCIDYADTWSSKRVH
Ga0307515_1000084946F092994GGAMDLSAGRRRISAEERPKRFTDGRCLYCGGFNNRAAECAARKKAQRFKAAGAEVKDVETGTGSEESRKE
Ga0307515_1000084949F022123N/AMRFHDLPDVISPNIRTDSYNRMQEYNSNCTSRTNWFDLARTHSSLSEPEHLNAFESMEGLTNTEVDTLILPVYCWEQSDVPSPWNTYWTEAAAYRGGLELDDPVFGSNWTKYLGAHAGCDCDPEVPCECEGHTCLGTHLTEGHAPAAAATAKPAPVPLVVIEPPTPTPTDIDAYNWHW
Ga0307515_1000084956F019765GGAGMLQDMDNMEASCDVYVKVGTFNPLEQSKNSLLTVNKMGMVRATILHDLIPGVSLM

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