NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000733

Scaffold Ga0307515_10000733


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000733 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75705
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (42.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016905Metagenome / Metatranscriptome243Y
F079540Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000073328F079540N/AVCRSIRLTSLRAASEDFGIPNFGQLFHTHIEEDWGPKVCGLVLRYDQNVLIDSICIKLQNGLLYDRQPFQNPTSVEHLGFDCKVQYTNANQGVMPEAYNIWVQYMQSDKNDLDYTFQGRIPSLPVLYFSWTPPNQILQFQQRLPAGKAISTCSKRCKKTQQXVLHPQAQECAVVIPTKFKDIHGWADGVDGSIRVVKQTNEMHIEPIGAIVGPAHLVRENAASGGINSAWLVNNHVDLDTYWTVY
Ga0307515_1000073343F016905N/AMPGHRYTPYEYALQKVVELFGNLLYSLHEHNLHHTYNVVLLFTQLENINYLVLRYLNTGLLPFEEFSEDQSFSEET

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