Scaffold Ga0307515

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10000467 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	96617
Total Scaffold Genes	119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (68.07%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

96617

Total Scaffold Genes

119 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

81 (68.07%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6992

Long. (^o)

-120.899

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F019765	Metagenome	227	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000046719	F019765	GAG	MLQVMDNMEASCVFCVKVGTFTHLEQSKISLLTVKKSGIEMLTI
Ga0307515_1000046721	F008227	N/A	MDTQPPPPGESGSNNGRLAGATSNTDILGTQQECRHKLVHRDATNAATKHMTQDAQLKIVCKTGRRKNKKQHAEGCECIRIEAIGGQ
Ga0307515_1000046734	F008531	N/A	MTHELELTLEASGIEWPALRNHIPCMAHIIQLASGAFMSSLGDKGRTKCLEPHERDLPFGETDSVDIVKRQRLRIDDKARNDQVSAMKPGLP
Ga0307515_100004674	F010438	GGAG	MWNRRPFMSASDLEMVSYPMRRVAKVLAEGPHWQIIEEYWNTAMQQNNIWSVALEACKKEILKELC
Ga0307515_100004675	F060560	N/A	VFTCTALRHALVEWQKNKGVHPKASKSKQKVDRPDRSNYLNYKNHGCKNASCCVATGHKSFTSPGVADTYIFFMNTWNTQLESFQQRVYKNTLATVKRWVQQAVNPTPAEVISVEAASFDNAILLDHLTSEVALEEPEIGSTHSNIPIDNNCMDDKLHFGMPGGNGD
Ga0307515_1000046775	F051592	GGA	MEVVKHADLHCMEEVGHWEVTHHKGNMSKHAESWVKMARRASGIGCFGVGIAGHSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307515_10000467

Overview

Ecosystem & Geography

Associated Families

Sequences