NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000467

Scaffold Ga0307515_10000467


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000467 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96617
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (68.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F008531Metagenome332Y
F010438Metagenome303Y
F019765Metagenome227Y
F051592Metagenome143Y
F060560Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000046719F019765GAGMLQVMDNMEASCVFCVKVGTFTHLEQSKISLLTVKKSGIEMLTI
Ga0307515_1000046721F008227N/AMDTQPPPPGESGSNNGRLAGATSNTDILGTQQECRHKLVHRDATNAATKHMTQDAQLKIVCKTGRRKNKKQHAEGCECIRIEAIGGQ
Ga0307515_1000046734F008531N/AMTHELELTLEASGIEWPALRNHIPCMAHIIQLASGAFMSSLGDKGRTKCLEPHERDLPFGETDSVDIVKRQRLRIDDKARNDQVSAMKPGLP
Ga0307515_100004674F010438GGAGMWNRRPFMSASDLEMVSYPMRRVAKVLAEGPHWQIIEEYWNTAMQQNNIWSVALEACKKEILKELC
Ga0307515_100004675F060560N/AVFTCTALRHALVEWQKNKGVHPKASKSKQKVDRPDRSNYLNYKNHGCKNASCCVATGHKSFTSPGVADTYIFFMNTWNTQLESFQQRVYKNTLATVKRWVQQAVNPTPAEVISVEAASFDNAILLDHLTSEVALEEPEIGSTHSNIPIDNNCMDDKLHFGMPGGNGD
Ga0307515_1000046775F051592GGAMEVVKHADLHCMEEVGHWEVTHHKGNMSKHAESWVKMARRASGIGCFGVGIAGHSI

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