NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000414

Scaffold Ga0307515_10000414


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000414 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)103227
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (39.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006048Metagenome382Y
F026456Metagenome197Y
F047400Metagenome149Y
F059517Metagenome133Y
F079403Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_10000414104F006048AGGAGMLKQRPTLDITRSNQYLVQAQVHKVKSHFVQSAWDNIAELHDLHRFESDAEHLEFIDSLLAANNYLFPVAEHVEGGVPGPNPTQRESKAANEWPASTLLPGRSNPVVYPHHIISLGE
Ga0307515_1000041415F026456N/AMFDHMDGVMRALAKKKTQWQEDLFLAVKLAPQKLSKYYAEVIPTTGMLLISAHILDPFQNLRSFRKWDKGMDINLEDETSYTKQYQEAFLKYVENE
Ga0307515_1000041464F079403GGAMIKDFRALLDNMQDATHRTAIYSGMLECIKHKSHNMTYILDEQLPAMELCIYHGIKVQVEGLEGEYISQMCRCSQSQSWCGGVRRNDWVWVKPSLGWCYSTLNGRLLWQLHRLFKIWLLNEDGAFVEYCVALAVTTIPENSRNLDPVMIFVPVRNALAASALHVFSVGNIVGCVHVIPEIATSSMTGDGSNKXWIVNS
Ga0307515_1000041490F047400GGAMNAFVFLPLQESMAQRGAGKHDQWRGYMTVLVVNHGSIESISIPSAGIRPMIKFDVDKLRDCFCQEVKWMLAIR
Ga0307515_1000041491F059517AGGAGMLKQQPMLDITRSNRYHVRPQVNKVKSHFIPSATDNMAELYDLHHFESNAEHLEFIDSLLADDKNLFPLAEHVEGGVCGPNPMQRVSKAANE
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