Basic Information | |
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Taxon OID | 3300028794 Open in IMG/M |
Scaffold ID | Ga0307515_10000243 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 135202 |
Total Scaffold Genes | 166 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 118 (71.08%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.6992 | Long. (o) | -120.899 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004778 | Metagenome | 423 | Y |
F016905 | Metagenome / Metatranscriptome | 243 | Y |
F036505 | Metagenome | 169 | Y |
F042672 | Metagenome | 157 | Y |
F063295 | Metagenome / Metatranscriptome | 129 | Y |
F078047 | Metagenome / Metatranscriptome | 116 | Y |
F079403 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307515_100002431 | F079403 | N/A | NRRDGKHPDAMIKDFRALLDNTQDATHRAAIYSGTREFIKHTSRNKTYISDEQLHAMELCIYHGINVQVEGLDGERISQMCRCTGSQSWRGGDRRNDWVWVKQRPGRCYGALNGRLPWQLQRLFKINLQNEDGAFVEYWLAMALTTIPENSGNLDPVSKFVQVRNAPAAVALQVFSVGNIVGCAHVIPEIATSTKTGDGRNERWIVNSHIDLATWNDVYN |
Ga0307515_10000243105 | F004778 | N/A | MLDRFELTDGRLLGITTDNASSNYLMTCKQQSTLETSAIKWPALRNLIPCMAHVIQLALGAFMSSLGVKGRTKSWEAHERDSQFRENESIDVGKSQRYRKEGNARINKVSAMTPGLAKIIEKVRIS |
Ga0307515_10000243112 | F016905 | N/A | MPGHRYTQVEYALQRVVELFGNLLLSLQELNLTHTYQVVFRFVQLKNIDYLVLRYLNTGLLPFEKFSEDLLFDEEA |
Ga0307515_10000243121 | F078047 | GAGG | MHWVDSGSRICVVGEYIAGTLEGGWIGDNLEFFGEVLGLFLVFCLFYYHMGHIHA |
Ga0307515_10000243128 | F063295 | GGAGG | VNERLPWQLQTLFIITLPNEDGAFVEYWFALALTTIPENSGNMDPILQFVQVQKAPAAVAVQVVSMGKIVGCAHGYPEIATCGMKGDGRNERWIVNSQIDLATWNDVPD |
Ga0307515_10000243145 | F042672 | GAGG | MTQQWVLRPQAQEYVVEIPIQIKDLLGWADCGDRFIRVVKQTNMKHIVPVGGTVGPAHLVRENAALGGINCVGLEYNIVDLHTYWTVY |
Ga0307515_1000024326 | F063295 | N/A | MCRCTGSQSWCGRDRRNDSVWVKQCPERCYGALNGRLPWQLQRLFKIKLLNEDGAFVEYWLALVLTTIPENSGNLNPVSKFVQVRKAPAAVALHVFRVGNIVGCTHIIPEMATSCKTGDGRNERWIVNSHIDLSTWNGVHN |
Ga0307515_1000024375 | F036505 | AGG | MGNHIPCMAHVIELAFGPFMSNLGVNGCMKSWAAHERNQQFGENEHTDIGKSQRLQNKGNARINKVLAMRPGLAKITEKVRISRHFERPETDIHVAENACCIDYADTWSSKRDLLQSKS |
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