Scaffold Ga0307515_10000243

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10000243
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135202
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 118 (71.08%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F016905	Metagenome / Metatranscriptome	243	Y
F036505	Metagenome	169	Y
F042672	Metagenome	157	Y
F063295	Metagenome / Metatranscriptome	129	Y
F078047	Metagenome / Metatranscriptome	116	Y
F079403	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100002431	F079403	N/A	NRRDGKHPDAMIKDFRALLDNTQDATHRAAIYSGTREFIKHTSRNKTYISDEQLHAMELCIYHGINVQVEGLDGERISQMCRCTGSQSWRGGDRRNDWVWVKQRPGRCYGALNGRLPWQLQRLFKINLQNEDGAFVEYWLAMALTTIPENSGNLDPVSKFVQVRNAPAAVALQVFSVGNIVGCAHVIPEIATSTKTGDGRNERWIVNSHIDLATWNDVYN
Ga0307515_10000243105	F004778	N/A	MLDRFELTDGRLLGITTDNASSNYLMTCKQQSTLETSAIKWPALRNLIPCMAHVIQLALGAFMSSLGVKGRTKSWEAHERDSQFRENESIDVGKSQRYRKEGNARINKVSAMTPGLAKIIEKVRIS
Ga0307515_10000243112	F016905	N/A	MPGHRYTQVEYALQRVVELFGNLLLSLQELNLTHTYQVVFRFVQLKNIDYLVLRYLNTGLLPFEKFSEDLLFDEEA
Ga0307515_10000243121	F078047	GAGG	MHWVDSGSRICVVGEYIAGTLEGGWIGDNLEFFGEVLGLFLVFCLFYYHMGHIHA
Ga0307515_10000243128	F063295	GGAGG	VNERLPWQLQTLFIITLPNEDGAFVEYWFALALTTIPENSGNMDPILQFVQVQKAPAAVAVQVVSMGKIVGCAHGYPEIATCGMKGDGRNERWIVNSQIDLATWNDVPD
Ga0307515_10000243145	F042672	GAGG	MTQQWVLRPQAQEYVVEIPIQIKDLLGWADCGDRFIRVVKQTNMKHIVPVGGTVGPAHLVRENAALGGINCVGLEYNIVDLHTYWTVY
Ga0307515_1000024326	F063295	N/A	MCRCTGSQSWCGRDRRNDSVWVKQCPERCYGALNGRLPWQLQRLFKIKLLNEDGAFVEYWLALVLTTIPENSGNLNPVSKFVQVRKAPAAVALHVFRVGNIVGCTHIIPEMATSCKTGDGRNERWIVNSHIDLSTWNGVHN
Ga0307515_1000024375	F036505	AGG	MGNHIPCMAHVIELAFGPFMSNLGVNGCMKSWAAHERNQQFGENEHTDIGKSQRLQNKGNARINKVLAMRPGLAKITEKVRISRHFERPETDIHVAENACCIDYADTWSSKRDLLQSKS