Scaffold Ga0307515_10000214

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10000214
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142671
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (37.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F048690	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000021419	F048690	GAG	MLQVMENMEASCVFYVKVGTFTHPEQSKMTLMSVTNTGIVTLTIQHDIIVSIIFMQYPRDYLRQTSADVLSPAKHDVNI
Ga0307515_1000021420	F008227	N/A	MDTQPPLPGESXSNTGRLAGATTNTDILGTQHERRHKLVHCDAANAATKHMTQDAHLEIVHKTGSRKNKKQHAVGCEYIHIEGTRSQLTV
Ga0307515_1000021456	F004778	GGA	VKGQHTAARLAIHLKDVLDRFELTKGRKLGIMADIDSSKYSMTRELQSTLEASAMQCPALRNHIPCMVHVIQLALGAFMSSLGVKAGTKSWEAHERVHQFGENESIDIGQSQRLRKEGHARINKVSAMNPGLAKVIAKVGI
Ga0307515_1000021478	F008531	AGGA	MEHVIQLALGAFMSSLSVKGRTKSWEAHEHNQQFEENESIEIGKSQRLRKEGNARINWVLAMKLGLAR
Ga0307515_1000021499	F008531	AGGA	MAHIIQTALGAFMSSLSVKGRTKSWEAYERDLEFGENESIDIGKCPRLRKEGNAGINKVSAVRPG