NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000170

Scaffold Ga0307515_10000170


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000170 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)159559
Total Scaffold Genes177 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (41.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F038958Metagenome164Y
F047400Metagenome149Y
F079403Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100001701F047400N/AQHGAGKHDQWRGYMTVLVVNHGIIKSISILTADIRPMRKFDVDTPCDCFRQEVKWTLAIR
Ga0307515_1000017061F038958N/AMASMTIDVHPSKAKLTLFHDGNCFLIASTLRAYSLQQILLRVVADGRTRLLHNAVYDRRKSXCDIGFLGIXAETNPNMW
Ga0307515_100001709F079403N/AMGPQNRHDGQHPDAMIKDFRALLDNTQEATHRVTIYNGTREFLKHKSRNKTYISDEQLHAMELCIYRGTKVEVEGLESERISQICRCTGSQSWRGGDRRNHWVWVKQRPGRCFGALNGRLPWQLQRLFTMKLLNKDGAFVEYWLALALTTIPENSGNLDPVSKFVQVRQASAAVGLQVFRVGNIVGCVHVFPEIATCRKTGDGPNKRWIVNSHIDLATWNDVYN
Ga0307515_1000017092F008227N/AMDTQPPPQGESRSNTGRLEGATSNTECLGTQQEPRQKLVHRDAANAATKHMTLDAHLNIVRKTGSRKNKMQRAVGCECIHIEAIGGQFTV

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