Scaffold Ga0307515_10000127

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10000127
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 182858
• Total Scaffold Genes: 193
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (42.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F026456	Metagenome	197	Y
F078047	Metagenome / Metatranscriptome	116	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_10000127149	F078047	GAGG	MHWLDGYSKDCAMDGYFAGTLEGGWMGDNLQFFGEVLGLFLVFCILYY
Ga0307515_10000127182	F026456	N/A	VYNDIFDHIDGMIRALAEEMSQWEEDLFFAVKLAXQKLSNYYAEVTPTTGMLLMSAHILDPFRKSRPYXMWGKGMDINHEDETFYTTQYQEACLKYVEKEYCA
Ga0307515_10000127186	F088003	N/A	MTNIITARNREPPLSTQAFVPTIHEFEHHDDVSPGMFADKFREKHPREWTKQALKTLEEATGSYMVEVIAESHFRRSN
Ga0307515_1000012773	F006048	GAGG	MAHIAYYTPNWYQVPAQVDKDISHFTQSAGDNIAEHYGLHHFESDAEHLEFIDPLLADNKYLFPLAEGVEGGVRGPNPTQRVWKAADNCPVSTLLPGGSNHMVYLHQMLSLGE