Scaffold Ga0307515_10000111

Overview

Basic Information

• Taxon OID: 3300028794
• Scaffold ID: Ga0307515_10000111
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 195200
• Total Scaffold Genes: 201
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (65.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6992
  • Long. (^o): -120.899

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F008531	Metagenome	332	Y
F079403	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_1000011111	F079403	N/A	MRELNHQALALRRENSAAACKVLASGADLAAPLSPQSYAKPEFMGPHNRRDGKHPDAMIKDFRALLDNMHDATHRAAIYSGTQEFIQHKSHNKTYILDEQLHAMELCISHGIKVQVEGLEGECIFQMYRFRGSQSWRGGDRRNDWVWVKHRLGRCYGALNGHLPWQLRRLFKIELQNDDGAFVEYSLALALTTIPENSDDLDPVSKFVQVRKAPAAVALQVFSVGNIVGCAH
Ga0307515_10000111174	F008531	N/A	MVHVIQLALGLFMCSFSVKGRTNSWEAHERNQQFGENHSVDIGKSQRLQKGGNARINKVSAMRPRLAKRIAKV
Ga0307515_100001112	F004891	GGA	MIAWASGLGMGVGRFSRPLRGVGVLAMPVAGLDITRRVESVCDVPLGAGGLQLHVPGVAVGVIIERPCVVDGVISAMRELFSEDERVEF
Ga0307515_1000011151	F080709	N/A	MRKREMRGEEGNHDEKLGLERISCASQCTIPDTAGTSPDPVCNYTDTWSSQPIQASRTPD