NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307299_10022980

Scaffold Ga0307299_10022980


Overview

Basic Information
Taxon OID3300028793 Open in IMG/M
Scaffold IDGa0307299_10022980 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2243
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022289Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0307299_100229804F022289N/AVIFPPFAKRASRLALLALLLSTTFCRGEPATQDQSNEYDRILQLISNEDWKGASDAAISYLAKAGTSGNLQARLRYIIIYTTAGAVSTGAFEFDVLDQRLKGFVGKSVTLPYRPVVNGACSGGMNAICISDPHSTSFMVIAANKSSTTIHAFEYVQLWQAIDFAAHPGEWGSITGTLRKIAPNPNKSRAIVMRIYIDDATVAFSKHS

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