NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302232_10627985

Scaffold Ga0302232_10627985


Overview

Basic Information
Taxon OID3300028789 Open in IMG/M
Scaffold IDGa0302232_10627985 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032398Metagenome / Metatranscriptome180Y
F103584Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0302232_106279851F032398N/ADHDDAQRIATFLESHPGWSAFWDKRDGVWRVTEDDPDSELYAESADAGTAIDYMATHSQREVRHDNCE
Ga0302232_106279852F103584GGAMITVNKQPLSGTPGDIRAKVEDLARGQGDREYLAGTWFRELAVKLATREGLTVSAVSYDTAVYELEVTLARAPHLDEIVIGHSQPGDHCQITLDRWLPISDEPSLEDAANTV

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