NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307517_10055069

Scaffold Ga0307517_10055069


Overview

Basic Information
Taxon OID3300028786 Open in IMG/M
Scaffold IDGa0307517_10055069 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3915
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)48.4473Long. (o)-122.323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016904Metagenome243Y
F034007Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0307517_100550693F034007N/AMPGTGKSTFAKKRRAKRLKVYHRCAKWTCNATCHSLGMVSLNHEDKIQFIKDGLSKGSLDNLLMTLETHPSGDVHRAIHDL
Ga0307517_100550695F016904N/AMLLIKLKDTRIHKQRLKSNLSFLRLSLDDQFIRLMEGSITGMKDCSWSINCSAVAAEIMIYRAEDVRNCYFTA

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