Scaffold Ga0307517_10030133

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10030133
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6372
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018110	Metagenome	236	Y
F040184	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100301331	F018110	N/A	MIITYVNNKSSSFHSTGIGYTIRLGYESAKYLLYQGLYNINLD
Ga0307517_100301332	F040184	GAG	MQSYHLYVGQLESHSLFLSLYXLIYLFILKKHVYVQVVVIVAHIFPWFYIQERLKRPL