Scaffold Ga0307517_10026346

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10026346
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7051
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae → Tuber → Tuber borchii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014688	Metagenome	260	Y
F043705	Metagenome	155	Y
F052297	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100263461	F043705	GGGGG	MISRGVEISIAGGGGEMVGGLSLGRNQAPYIGIFPQP
Ga0307517_1002634610	F043705	GGGGG	MISRGVEISIARGGGEMVRGLSLGRNQAPYVGIFSQL
Ga0307517_100263464	F052297	GAG	MAVVVSRERKGDPSAARCPPESGRVSLESAHRGESNGIGPEASACL
Ga0307517_100263469	F014688	N/A	VLSEVQTKCGIRGRTELDEPVSTMNGNENPKEGRQTCLRRGGEMA