Scaffold Ga0307517_10021651

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10021651
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8104
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F006456	Metagenome	372	Y
F016904	Metagenome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100216513	F016904	N/A	MLLTKPKDARFHMRRLKSKLSFLQLSLIDQFMRLMEGSIIGMKDCSWSINCLVVVVEIMICHAEDVRNFCSTT
Ga0307517_100216515	F002798	N/A	MVSINREDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHRAIHDLWPQFHKEHTRHSLGNLTKKDHVCQFLRKLDGKPILDP
Ga0307517_100216516	F006456	N/A	MDTTLEKLKKYFPALPRNVIAKIYRVMCARLRLLMNHGIPEYIRWLIEAKVRLSCESSNSFISYMPGTDKSTFAKKRVQND