Scaffold Ga0307517_10014785

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10014785
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10446
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000510	Metagenome	1067	Y
F038486	Metagenome	165	Y
F059498	Metagenome	133	Y
F096511	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100147852	F000510	N/A	MIRNLGGVWTLSKLKQKKTENYQAKLNKIKKLSREQTLLTSKRPPTEIKTDHGNETSIYILNIYIFFTLVS
Ga0307517_100147853	F059498	AGG	LCDRDIATNFDAVAGEVILVDSCAVIFICCDFYLFFLKKKETKFLLAAVLFIYGCGTVHNKFFGGIRYRPFVS
Ga0307517_100147855	F038486	N/A	MLMQLMEDSTDSPSVNMIPFPTRTIPDGEIIPTYIMGTSLNKAIKADSSILMDFNPNRIIKQDNPLHS
Ga0307517_100147859	F096511	GAG	LKTANTKIDCGKDTLSMEVRDEKIEFNFHDAMKYPYNNVYSIKFYDQVHKCVQQVFDFDCENGLSVALSYDYDLPR