Scaffold Ga0307517_10005088

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10005088
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19976
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008927	Metagenome	325	Y
F023009	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100050881	F008927	N/A	MPSKWIGCIHRGQVGKRWSPRENTYWYDPEDKSCNAGRPEYEMQLHTEFSTEPTKEDWPSSVQRVRLPSMSTRAR
Ga0307517_1000508822	F008927	AGGCGG	MPSKWIVCIHRGLVGKIWSPREDAYRYDPEHKSCNAGRPEYNLQLQVEFSTEPTKEDWPSSVQRVRLPSVSTRVR
Ga0307517_1000508824	F023009	N/A	MFGRDTQTPQPKEKPFEPRPVRTVSINEVLTLIPELGTQEPYHESYFWWINPENTVTLEDITALYQYQYDKDFIYHTHSEKSNSIWYTQYPESNQHSSQGFEIPAVWGGNKR