Scaffold Ga0307517_10003267

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10003267
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25360
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (18.52%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024230	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100032671	F024230	N/A	YPVTFEGLDPSTALGENVFSGPSPHPNAVLNLFVQQNLTSALPMAYYMAVRRGLDSLLDERLPESARLPPKILRRTMKGLLVLREMELTETRRLIFGSRSCSRPGCPSRDATGPGFSEAYHKIADRIVGSVELHAGTKLLQVLSLREICGDDGFGFCKGCVEAWEAGHADVRKKAWAALPDVFGLRA
Ga0307517_1000326713	F024230	N/A	MPAVRSQILEIIRDAYPVTFEGLDPSKVLGENIFSGPTPHPNAVLNLFVQQRLASARPMAYYMAARRGLNSLMDRRLPRSATLSPEILQTAIRGLMELREMELKATHNLIFGSKDSRSCSRPNCSSRNAAGPGIPEARQKIVDRIVGSVHSGTKLLQVLSLREVCGGDCLGFCEDCVRGWESGHAGVRKEAWAALPDVFGLKD
Ga0307517_1000326715	F024230	N/A	MLVKSNLATAESPNGCPRIPSSDTATDFATLLKVIYLPGYVTLFLCRRIVPLRTSVYRFPERNKVPDFSTFSSLLRITAKYQMPNIRSQMLEVIRDAYPVTFEGLDPSKALGENVFSGPAPHPNAVLNLFVQQNLTSALPMAYYMAVRRGPDLLMDSRFPANARLAPEILQAAIKGLIALREMELKEIHRLILGPKGPHRSSPKCPSCDVVGPRVSEAHQKVIDQITDSCRSGTRLLQVLSLGDICGGDYHGFCESCVKEWEYGHAEVRKKAWAALPDVFGLRA
Ga0307517_1000326718	F024230	N/A	MTTKYQMPAVRSQILEAVRDAYPETFEGLDPSKTLGESVFSGPTPHPNTVLNLFVQQNLTSALPMAYYMAVRRGPESLMGRRLPASARLPPETLQATIQGLFALREMELKETHRLIFGSNPPRSCLRQTCPSRNTTGPRASEAHQKMVDRLVDSANSGTKLLQVLSLGEVCGGDSLGFCEGCVEAWEARHADVRKKAWVALPDVFGLKLRLELA
Ga0307517_1000326721	F024230	N/A	VPDFATFSSLLRITTKYEMPNVRSQLLEVIRDAYPETFEGLDPSKALGESVFSGPTPHPNAVLNLFVQQNLTSALPMAYYMAVRRGPMSLVGRGLPASARLPPETLQATIQGLFTLREMELKETHRLIFGSKGSRSCSQLNCPSRNAMGPGVSEAHQKIVDRIVDTVRSGTKLLQVLSLREVCGGDSLEFCEGCVGAWETGHADMRKKAWTALPDVFGLNP
Ga0307517_1000326723	F024230	N/A	MLTVRSQILEVIRDAYPETFEGLDPSKALGESVFSGPTPHPNAVLNLFVQQKLASALPMAYYMAVRRGPESLMDRSLPASARLPPETLQATIQGLFTLREMELKETHRLIFGSKGSRFGSQFGSRQNCPSCNVTGPGISEAHQKVIDQIVDSIHSGTKLLQVPPLREICGGDSLGFCKECVGRWESEHADVRKKAWAALPDVFGLKS
Ga0307517_1000326726	F024230	N/A	MTTKYEMLTVRSQILEVILGAYPETFEGLDPSKALGESVFSGPTPHPNAVLNLFVQQKLASALPMAYYMAVRRGPESLMGRRLPASARLPPDTLQATIQGLFTLREMELKETHRLIFGSKGSRFCSRPNCPSRNATGPGISEAHQKVVDQIVDSIHSGTKVLQVPSLRKFCGGDSLGFCEECVGGWESGHADVRKKAWAALPDVFGLKG
Ga0307517_100032674	F024230	N/A	MNNSADPIIRRFPERNKVPDFVTFSSLLRITAKYQMPTVRSQLLEVIRDAYPVTFEGLDPSKALGENVFSRSIPHPNAVLNLFVQQNLTSALPMAYYMAVRRGPDSLLDECLPASARLAPKILRVAMKGLIVLREMELKETHNLILGPKGPHRSSSECSSCDVVGPRVSEAHQKVIDRITDSSRSGTRLLQVLSLGDICGGDYHGFCESCVKEWEYGHAGVRKKAWTTLPGVFGLGA
Ga0307517_100032677	F024230	N/A	MPTVRSRILKVIRDAYPVTFEGLDPSKVLGENVFSRPTPHPNAVLNLFVQQNITSALPMAYYMAVRRGPGSLLGERLPASARLPPKILQAAITGLFVLRGMELKETRRLIFGPKGSRSCSRPNCPSRNPTGPGFSEAHHEIADRIADSVELHSGTKLLQVLSLREVCGDDGFGFCEGCVDTWEAKHADVRKRAWAALPDVFGLKA
Ga0307517_100032679	F024230	AGG	MSPRVCHSTRLQVNSSADSPVYRFREWNETPDFTTFSSLLRITAKYQMPTVRSRILKVIHSAYPVTFEGLDPSKALGESVFSRPAPHPNAVLNLFVQQNLTPALPMAYYMAVRRGPDSLLDECLPASARLPPKTLRVAMKGLFVLREMELKETRRLIFGSKGSRSCSRPDCPSHDATGPGFSEAHHKIADRIVGSVELHSGTKLLQVLSLREVCEGDGFVFCDGCVEAWEAGHADVRKKAWAALPDVFGLKV