Scaffold Ga0307517_10002338

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10002338
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30602
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008927	Metagenome	325	Y
F036154	Metagenome	170	Y
F071808	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_1000233817	F008927	AGGAGG	MPSKWIGCIHRGQVGKRWSPSQKAYRYDPEDKSCNAGRPEYNMQLQVEFSTEPTKDDWPSSVQ
Ga0307517_1000233820	F036154	AGG	MHTPVLGQMYWLGTKVHEDKSVNVELQQKEMVSEFMDCDDTEYNGILDALAAGIYIRATVHSMEIMPSASTSSRVVMGLFHCTIVDSDSDSGIEAYPENCGA
Ga0307517_1000233825	F071808	N/A	MKKRSGIAAQRAERSEDCVDGESVDGEGKSVVRKKRS
Ga0307517_100023386	F008927	AGGAGG	MPSKWIGRIHRGQVGKRWSLREKTYRCDPEDKSYNAGRPEYNRQLRVEFSTEPTKADWPSSVQRVRLPSASTKAR