Scaffold Ga0307517_10001152

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10001152
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44623
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (72.41%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012738	Metagenome	277	Y
F036154	Metagenome	170	Y
F045458	Metagenome	152	Y
F056202	Metagenome	137	Y
F061411	Metagenome	131	Y
F071808	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_1000115219	F071808	GAG	MKKRSRIAAQKAERPEDCVDGESVDGEGKSVVRKKRS
Ga0307517_1000115225	F045458	GGA	MGERIRAKDETKREILWWINTEVGVQVRQGKRNRIKESTEGRTGVRGQAKN
Ga0307517_1000115228	F036154	AGG	MHAPVLGQMYWLGTKVHEDKSENVELQRKEMVSGFLDCDDTEYNGILDALGTGIYIRATVHSMEMMRSGSTISRVVMGLVHCTIVDSDSDSEIEAHPENWGA
Ga0307517_1000115230	F061411	N/A	MRGFEWANGGGKAVKLVRGGRSARMLERRTRKSRAIIQALELGYEIKGRDSSLEIFQHCDSGRRVVKGKITWGLVPDSDS
Ga0307517_1000115237	F056202	GAG	VWLQKTTRGLSKMKKRDAEKGRRQCKRRKAANLLHNSEHGSEDIANSTIDAKGVLFSAI
Ga0307517_100011525	F012738	N/A	MSCGRSTDQKLFAGYIRGVRVTASWGATWITPGNQLRAYFDLRVVVSLTVEGLGLTGEAPRLPGQPPESQSQATP