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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028786 Open in IMG/M |
| Scaffold ID | Ga0307517_10000611 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 60937 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (68.06%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 48.4473 | Long. (o) | -122.323 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024230 | Metagenome / Metatranscriptome | 206 | Y |
| F092967 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307517_1000061126 | F024230 | GGA | VPDFITFSSLLRITAKYEMPTVRSQILEVVHDAYPETFEGLDPSKALGENVFSGPTPHSNAVLNMFVQQNLASTLPMAYYMAVRRGLGSLMDRRLPASARLPPEILQIATQGLFALREMELRETHRLIFGSKGSQSCPRPNCTSFKATGPGVSEAHQKVVDRIVDSVHSGTKLLQVLSLGEVCGGDLLGFCEGCVKGWEAGHADVRKKTWVALPGVFGLKA |
| Ga0307517_100006114 | F024230 | N/A | MDRSFDHPVHRFSERNKVPDFVAFSSLLRITTKYEMPTVRSQLLEVIRDAYPATFEGIDPSKAHGDNIFSGSTPYPNAVLNLFIQQDLASALPMAYHTAVWRGPDSLMNARFRESAWLPPEILRMAIKDLIALREMELGETRRLVFGPKGSQPRSWPNRTPRTATGPGVSEIRQKIVDLIIDSVHSGTKLFQALSLRCVEGILPNLAGAVWK |
| Ga0307517_1000061161 | F092967 | N/A | MLPPTLPNPNLVSPFPLPPIEDIRPYLWSQRLLTSLSVNQTRGQLVHCPYYKPFSSLDSGAPSPPFLATADHYFEWRSIYTNIPIAVITFVVHPAFSQEKPLVHIHQHPIFLCESCVVSWWDFPTALPGDVVAWLQTQADLYPQEESFWLFSHALADFVDKFWKPVFPYDHKSPNLRPDRAPRLPLTPNHPSLTTPLVPSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |