NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307282_10304986

Scaffold Ga0307282_10304986


Overview

Basic Information
Taxon OID3300028784 Open in IMG/M
Scaffold IDGa0307282_10304986 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020474Metagenome224Y
F033381Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0307282_103049862F020474AGGAGGVSQKDTQDIEVGEPIYQCPDCGSVTIRGKWSIEGAKTLTDAALMLRDYAHELEHMRASGLELATPVEADYGIVRPGGVLSDEDMEDDE
Ga0307282_103049863F033381N/AMEEDWRRVVDGQWLRDCMEEWRDWGHLVMRAKWTMDGATTLADVASRFRERAEEFEELARAGFELEEPVNDDYAFLVRPGEESPMRLVEEDE

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