Scaffold Ga0307282_10050198

Overview

Basic Information

• Taxon OID: 3300028784
• Scaffold ID: Ga0307282_10050198
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022254	Metagenome / Metatranscriptome	215	Y
F046050	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307282_100501983	F022254	AGGGGG	MLQPRDRRTQPDRQRSHIHLHARVDRLEDAISHFYNVINELRERVSTLEKKLNPPAKDEWIN
Ga0307282_100501984	F046050	GGAGG	MKAPWTDPGLRELLALAALAASGCGLALARDDLMFTAIFAAAWAVTIVGLMRYLR