Scaffold Ga0302279_10062915

Overview

Basic Information

• Taxon OID: 3300028783
• Scaffold ID: Ga0302279_10062915
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2150
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058319	Metagenome / Metatranscriptome	135	Y
F066218	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302279_100629153	F066218	N/A	VAVRKAGKTRSARARGLRTLQHQTLPPTTRFAIDTEVWFRGLIVERQPAAKRDHRWCTKDQVHDEAIGWFLDRHAVQPFEDYPARRTADEDLTFWVDSKLMQRARRMAQRDGVKVARLIDAALSSYAREQLPQQLLRYRQRVQAQASRLYQATHPRARPPRKRRTGR
Ga0302279_100629154	F058319	GGAGG	LSLAGQGHIKDRLFDAYCRYLEDIQQSDVPGELGHEFGAMIQALHRAPALPGDDVVKASVRKLSNDQACRYAELVVRLYGMFAGMNYHVSARSGRPLVPLAKFLATEASSSP