Basic Information | |
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Taxon OID | 3300028783 Open in IMG/M |
Scaffold ID | Ga0302279_10000063 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 141535 |
Total Scaffold Genes | 119 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (63.03%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F023377 | Metagenome / Metatranscriptome | 210 | Y |
F031516 | Metagenome / Metatranscriptome | 182 | Y |
F044583 | Metagenome / Metatranscriptome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0302279_1000006357 | F031516 | GGCGG | MVDIRFPSSVDMLHFDTAQMAAITQAHFFSRVAEFIRDQTTVAAYRQAALDTTLRTALWAPHWPTLRAASEHDAALFMCFLLACATLGVDATRAAEAVRQASQPETSMKLFLSERGLLRFSAFDVPDLTRPNAEA |
Ga0302279_100000638 | F023377 | AGG | MTHRPVCSPRAIRMAMGAALVLAAAGAQAMTVSYQCTGRRVLTAELTPGEGQLHFEGQNWTVMRVRGGREAHYANSKQGVDVVTKERTMTFRHGTETLQCFLFSDALPGDAPHTTN |
Ga0302279_1000006394 | F044583 | AGGAGG | MSYALSPNQEILRARIRFALRRATGFVFDIDAMLRKPELRARRIGLWRDVADDELSTLLDQLETEFQMDAPSDDDSAERTIVIRRQDLPDTHR |
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