Scaffold Ga0302279_10000063

Overview

Basic Information

• Taxon OID: 3300028783
• Scaffold ID: Ga0302279_10000063
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141535
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (63.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023377	Metagenome / Metatranscriptome	210	Y
F031516	Metagenome / Metatranscriptome	182	Y
F044583	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302279_1000006357	F031516	GGCGG	MVDIRFPSSVDMLHFDTAQMAAITQAHFFSRVAEFIRDQTTVAAYRQAALDTTLRTALWAPHWPTLRAASEHDAALFMCFLLACATLGVDATRAAEAVRQASQPETSMKLFLSERGLLRFSAFDVPDLTRPNAEA
Ga0302279_100000638	F023377	AGG	MTHRPVCSPRAIRMAMGAALVLAAAGAQAMTVSYQCTGRRVLTAELTPGEGQLHFEGQNWTVMRVRGGREAHYANSKQGVDVVTKERTMTFRHGTETLQCFLFSDALPGDAPHTTN
Ga0302279_1000006394	F044583	AGGAGG	MSYALSPNQEILRARIRFALRRATGFVFDIDAMLRKPELRARRIGLWRDVADDELSTLLDQLETEFQMDAPSDDDSAERTIVIRRQDLPDTHR