Scaffold Ga0307288_10000005

Overview

Basic Information

• Taxon OID: 3300028778
• Scaffold ID: Ga0307288_10000005
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 203287
• Total Scaffold Genes: 194
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (70.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038895	Metagenome / Metatranscriptome	165	Y
F057346	Metagenome / Metatranscriptome	136	Y
F092512	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307288_10000005148	F057346	GGAGG	VKKPERIGNWSPDGKAERAALRRDYRELTPAQRVEQVFELSRFMSRVAEAGRRRGIA
Ga0307288_10000005150	F092512	GGGGG	MPTFAVRFKGLMTGQERERLAATGIKLEGSRSSMIAGNPETGTVRTGRPIYTVSVEAASKDEALAKVREAIEPDSSNFSGWEAGPL
Ga0307288_1000000539	F038895	GGCGG	LGSDSLPTAVESAKERDLKPLAQESAEKLGLDCRQLEVMERYLLDAWFFGIRTGHTVMIETKMGQTDPTPVILSMQDEFQELMERCGEALNTTVGTTIQAWNYLGQAWIAGAKFWEVEIAARLIESRIGGFDEALQRLSDPE