NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307280_10003780

Scaffold Ga0307280_10003780


Overview

Basic Information
Taxon OID3300028768 Open in IMG/M
Scaffold IDGa0307280_10003780 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3855
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026839Metagenome / Metatranscriptome196Y
F035467Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0307280_100037806F026839N/AMLIVGLVFGGCQSTENHVRNRDAVVHNRYLVEHNAVDTICACP
Ga0307280_100037807F035467N/AMSTAVNDNFIAMKNSIIFISALSLVAMMLASCNSIPSAFAPDETITTGVTRQTNDTSRERSAEDSVNSISGGHY

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