Scaffold Ga0307280_10000004

Overview

Basic Information

• Taxon OID: 3300028768
• Scaffold ID: Ga0307280_10000004
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120159
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (60.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015476	Metagenome / Metatranscriptome	254	Y
F090727	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307280_1000000455	F015476	GAG	MDVLRNLFGNLSAGIIRLLVTVGILAAVYFFIVKPTLETTEKISNEVNVNVQKGFQQSDLGDINKTIDDVNRRVQREVRQSLRQSQRQGNADQLIRCIQRANQNVNRIQRCSERFQ
Ga0307280_1000000461	F090727	N/A	MEFPLALADLETAILDSCGAEEEWPASIAAGICAGVDYAIAHPEVAETLALDAPGGSDTLRRYESVIARLTGFLRARAPTDSRLPGATDEALVAGMVGLVGDHLRIGRQDRLEELRPELVLLVLLPYLGFAEAKKWANQVAK