NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302202_10340761

Scaffold Ga0302202_10340761


Overview

Basic Information
Taxon OID3300028762 Open in IMG/M
Scaffold IDGa0302202_10340761 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001050Metagenome / Metatranscriptome792Y
F080786Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0302202_103407611F080786N/ARLRTEETEDLIFTDETDARLLLSSLQPAAQSRQLLEILKASQQPEPKANVGCDLTIALVMSSTGQQAFKVSIHEGMRREIIKRIAQLRQTAYRASRNNFRINSNERGGR
Ga0302202_103407612F001050N/ANFKSKAAQSQLLAFYNNQWLNIPFQSIDTAFVFPLTYEIADELERVGGEILGGVNKSKTFRVMVAYFAAIYKLRAPVQSTFA

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